Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015903355.1_cds_XP_016453390.1_47521
CDS Infomation

[gene=LOC107777774] [db_xref=GeneID:107777774] [protein=neutral ceramidase-like] [protein_id=XP_016453390.1] [location=join(41384..41733,41890..42098,42637..42981,57825..58089,58190..58460,58556..58681,59419..59482,63353..63522,64204..64752)] [gbkey=CDS]
Sequence

ATGGGAGTATCTGATTGTCTCAAAGTTGAGTTTTGGAGATCCACAGGAGGGATGATTTGG
TTGGCTCTGTTGGTGTTGCTATTATCACAAGTGAATGGAAAGGGAGCAGCGGAAGCTTCC
AATTACTTAGTCGGGCTTGGAAGCTATGATATTACTGGGCCGGCTGCTGATGTCAACATG
ATGGGATATGCTAACACGGAACAGATTGCATCAGGCATCCACTTCAGGTTGCGAGCCCGT
ACCTTCATTGTAGCTGAACCTCAGGGGAGGCGTGTTGCTTTTGTGAACCTTGATGCTTGC
ATGGCCTCGCAGGTTGTAACCATCAAAGTTCTTGAGAGATTGAAGGCTAGGTATGGGAAC
CTTTACACAGAACAAAATGTTGCTATTAGTGGGATTCACACCCATGCTGGCCCTGGTGGT
TATCTACAATATGTAGTGTATATTGTAACATCTCTTGGTTTTGTCCGTCAATCTTTTGAT
GCTCTAGTTGATGGGATTGAGCAAAGTATCATACAAGCTCATGAAAACCTCCGACCTGGA
TCAATATTTGTCAATAAAGGGGAGCTACTGGATGCTGGTGTGAATCGTAGCCCTAGTGCT
TATTTGAATAACCCTGCTGGGGAACGTAGTAAATATAAGTATGATGTTCACAAAGAAATG
ACCCTTTTAAAGTTTGTTGATGATGAATGGGGTCCAGTAGGCAGCTTTAATTGGTTTGCA
ACTCATGGAACTTCTATGAGTCGAACTAACTCTTTGATTAGTGGGGATAACAAAGGAGCT
GCTGCACGGTTTATGGAAGATTGGTTCGATCAGAAAAGTACTGAAATGTCAAACTTTAAC
ATATCTAAAGTGCGTGAACTTCCCCGAAGAGTCTCAAACATCATACCAACTGTTCATGGA
AAGCATCATGAGCTACTAGAACTTGCTGCTTCTTTCCAGTCTTCTCCAGGTAAGCCAGTC
ACCAGGTTGATGAGTGTAGCCAGACGTGTCAGGAGTGCCTTCAGGTTGGCTGATAGGCCG
AGATTTGTTTCTGCTTTTTGTCAAACCAACTGTGGTGACGTCAGTCCCAATGTGCTCGGT
GCGTTCTGCATAGACACAGGGCTGCCTTGTGACTTCAATCATAGTACTTGTGGTGGAAAG
AACGAGTTATGTTATGGTCGAGGACCAGGATACCCAGATGAATTTGAGAGTACACGCATC
ATTGGGGAGAGGCAATTTAAAAAAGCTGTGGAGCTTTTCAATAAAGCAACAGAGCAAGTA
AAGGGGAAGGTTGACTTTCGTCACACCTATGTGGACTTCTCCAATCTCGAGGTGACAATT
CCAAAAGAAGGTGCTGGTATTGAGACGGCTAAAACCTGTCCTGCTGCAATGGGGTTTGCA
TTTGCTGCCGGTACAACTGATGGACCTGGAGCATTTGATTTTCAGCAGGGAGATGACAAG
GGAAATGTTTTTTGGAGGTTGGTGCGGAACTTGCTTAAAAAACCAGGCAGTGAACAAATA
AAGTGTCAACATCCCAAGCCCATTTTGCTTGATACTGGTGAAATGAAGGAGCCCTATGAT
TGGGCACCTTCAATACTTCCTGTTCAGATTCTAACAATAGGGCAGCTGGTTATTCTCAGT
GTACCTGGAGAATTCAGTACCATGGCAGGAAGACGTCTGCGAGATGCTGTGAAGATGGTG
CTCACAAGTGGGGGTACCAAGGAGTTTGATAGCAATATTCATGTTGTGATAGCTGGGTTG
ACTAATACATATTCGCAATATATAACGACCTTTGAGGAGTACCAGATACAGAGATATGAG
GGTGCGTCTACACTGTATGGTCCATATACACTTAGCGCTTACATCCAACAGTTCAAGACT
CTAGCAGCTGCTCTCATCACAGGACAGACCTTGCAAGCAGGCCCTCAACCCCCTAATTTG
CTAGGAAAGCAGATAGGCTTGTTGCCTCCAGTTGTAATGGATGCGACACCACTTGGTTCC
AAATTTGGGGATTTAATTACCGATGTTCCTCAAAGCTCCGCCTTCAAGAGGGGTGACCTT
GTCACTGTTTCTTTTTGGTCAGCATGCCCCAGAAATGATCTCATGACTGAGGGTACATTT
GCTCTTGTTGAGATTCTTCAAGGAAAGGATACTTGGGTTCCTGCTTATGATGATGATGAC
TTCTGCCTTCGCTTTATATGGTCAAGACCTGCTAAACTCAGCACTCGAAGTAAGGCGACA
ATCGAATGGAGAATACCGGATTTAGCTGCTTCAGGTGTATATAGAATCAGGCATTTTGGT
GCTGCAAAGGCTCTTTTGGGTTCAGTTAAGCATTTTACAGGTTCATCTAGTGCTTTTGTG
GTCGCCTGA

Peptide Sequence

PEP ID

XP_016453390.1
PEP Infomation

PREDICTED: neutral ceramidase-like [Nicotiana tabacum]
Sequence

MGVSDCLKVEFWRSTGGMIWLALLVLLLSQVNGKGAAEASNYLVGLGSYDITGPAADVNM
MGYANTEQIASGIHFRLRARTFIVAEPQGRRVAFVNLDACMASQVVTIKVLERLKARYGN
LYTEQNVAISGIHTHAGPGGYLQYVVYIVTSLGFVRQSFDALVDGIEQSIIQAHENLRPG
SIFVNKGELLDAGVNRSPSAYLNNPAGERSKYKYDVHKEMTLLKFVDDEWGPVGSFNWFA
THGTSMSRTNSLISGDNKGAAARFMEDWFDQKSTEMSNFNISKVRELPRRVSNIIPTVHG
KHHELLELAASFQSSPGKPVTRLMSVARRVRSAFRLADRPRFVSAFCQTNCGDVSPNVLG
AFCIDTGLPCDFNHSTCGGKNELCYGRGPGYPDEFESTRIIGERQFKKAVELFNKATEQV
KGKVDFRHTYVDFSNLEVTIPKEGAGIETAKTCPAAMGFAFAAGTTDGPGAFDFQQGDDK
GNVFWRLVRNLLKKPGSEQIKCQHPKPILLDTGEMKEPYDWAPSILPVQILTIGQLVILS
VPGEFSTMAGRRLRDAVKMVLTSGGTKEFDSNIHVVIAGLTNTYSQYITTFEEYQIQRYE
GASTLYGPYTLSAYIQQFKTLAAALITGQTLQAGPQPPNLLGKQIGLLPPVVMDATPLGS
KFGDLITDVPQSSAFKRGDLVTVSFWSACPRNDLMTEGTFALVEILQGKDTWVPAYDDDD
FCLRFIWSRPAKLSTRSKATIEWRIPDLAASGVYRIRHFGAAKALLGSVKHFTGSSSAFV
VA

Transcript Sequence

Gene sequence data has not been registered.